com.chemaxon.overlap.wui

Class SlowlyDeserializingMms

java.lang.Object

com.chemaxon.overlap.wui.SlowlyDeserializingMms

All Implemented Interfaces:

Deserializer<MasterMoleculeStorage>, Serializable

public class SlowlyDeserializingMms
extends Object
implements Deserializer<MasterMoleculeStorage>

Test tool to write a trivial slowly loading molecule storage. This class is a valid Deserializer which loads a valid a small MasterMoleculeStorage. The loading does not access the ObjectInputStream; it is generated on-the-fly. The loading process is intentionally slow. The passed SubProgressObserver is accessed regularly.

Usage:

 # Create the binary storage
 java -cp overlap-examples-cli-dist/build/install/madfast-cli/lib/classpath.jar com.chemaxon.overlap.wui.SlowlyDeserializingMms > a.bin
 # Load the slowly loading storage multiple times
 overlap-examples-cli-dist/build/install/madfast-cli/bin/gui.sh \
     -allowedOrigins "*,*" -nobrowse -earlyStart \
     -mols -mms:a.bin:-name:slow0 -mols -mms:a.bin:-name:slow1 -mols -mms:a.bin:-name:slow2 -mols -mms:a.bin:-name:slow3 \
     -mols -mms:a.bin:-name:slow4 -mols -mms:a.bin:-name:slow5 -mols -mms:a.bin:-name:slow6 -mols -mms:a.bin:-name:slow7 \
     -mols -mms:a.bin:-name:slow8 -mols -mms:a.bin:-name:slow9 -mols -mms:a.bin:-name:slowA -mols -mms:a.bin:-name:slowB \
     -mols -mms:a.bin:-name:slowC -mols -mms:a.bin:-name:slowD -mols -mms:a.bin:-name:slowE -mols -mms:a.bin:-name:slowF \
     -mols -mms:a.bin:-name:slowG -mols -mms:a.bin:-name:slowH -mols -mms:a.bin:-name:slowI -mols -mms:a.bin:-name:slowJ \
     -mols -mms:a.bin:-name:slowK -mols -mms:a.bin:-name:slowL -mols -mms:a.bin:-name:slowM -mols -mms:a.bin:-name:slowN \
     -mols -mms:a.bin:-name:slowO -mols -mms:a.bin:-name:slowP -mols -mms:a.bin:-name:slowQ -mols -mms:a.bin:-name:slowR \
     -mols -mms:a.bin:-name:slowS -mols -mms:a.bin:-name:slowT -mols -mms:a.bin:-name:slowU -mols -mms:a.bin:-name:slowV \
     -mols -mms:a.bin:-name:slowW -mols -mms:a.bin:-name:slowX -mols -mms:a.bin:-name:slowY -mols -mms:a.bin:-name:slowZ
 

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
SlowlyDeserializingMms()

Method Summary

Modifier and Type	Method and Description
MasterMoleculeStorage	deserialize(ObjectInputStream ois, SubProgressObserver po) Deserialize.
Class<MasterMoleculeStorage>	getDeserializedType() Type to be deserialized.
static void	main(String[] args) Main method.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SlowlyDeserializingMms

public SlowlyDeserializingMms()

Method Detail

getDeserializedType

public Class<MasterMoleculeStorage> getDeserializedType()

Description copied from interface: Deserializer

Type to be deserialized.

Specified by:

getDeserializedType in interface Deserializer<MasterMoleculeStorage>

Returns:

deserialized type

deserialize

public MasterMoleculeStorage deserialize(ObjectInputStream ois,
                                         SubProgressObserver po)
                                  throws IOException,
                                         ClassNotFoundException

Description copied from interface: Deserializer

Deserialize. Work units for progress observing represent the logical units of the deserialized strucure and not its binary size.

Specified by:

deserialize in interface Deserializer<MasterMoleculeStorage>

Parameters:

ois - Stream to read from. Will not be closed upon finishing.

po - Progess observer to track progress. Possibly will be swithced to determinate using ProgressObserver.switchToDeterminate(long). Method ProgressObserver.done() will be called upon finishing.

Returns:

Deserialized instance

Throws:

IOException - when deserialization failed

ClassNotFoundException

main

public static void main(String[] args)
                 throws IOException

Main method. When invoked a serialized storage is written to System.out which can be read as a valid master molecule storage containing random (possibly invalid) structures. This main method also writes verbose messages to System.err.

Parameters:

args - Command line arguments not used

Throws:

IOException - propagated from underlying ObjectOutputStream