com.chemaxon.overlap.wui

Class SelfOverlapGuiContext

java.lang.Object

com.chemaxon.overlap.wui.SelfOverlapGuiContext

public class SelfOverlapGuiContext
extends Object

"Mega" context for self overlap gui. TODO: move towards self/interset knn TODO: move max q/t id int knnresult

Constructor Summary

Constructors

Constructor and Description
SelfOverlapGuiContext(ExecutorService executor, CalculateSelfOverlap.SelfOverlap res, String molsRef) Construct.

Method Summary

Modifier and Type	Method and Description
Optional<String>	getId(int index)
String	getInfoJson() Compose info JSON object.
KnnResults	getKnn()
String	getKnnJson() Get knn results.
int	getMaxQid()
int	getMaxTid()
Optional<Molecule>	getMol(int index)
int	getQueryMasterIndex(int queryIndex)
int	getTargetMasterIndex(int targetIndex)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SelfOverlapGuiContext

public SelfOverlapGuiContext(ExecutorService executor,
                             CalculateSelfOverlap.SelfOverlap res,
                             String molsRef)

Construct.

Parameters:

executor - Underlying executor for searches

res - Results object

Method Detail

getKnn

public KnnResults getKnn()

getQueryMasterIndex

public int getQueryMasterIndex(int queryIndex)

getTargetMasterIndex

public int getTargetMasterIndex(int targetIndex)

getMol

public Optional<Molecule> getMol(int index)

getId

public Optional<String> getId(int index)

getMaxQid

public int getMaxQid()

getMaxTid

public int getMaxTid()

getInfoJson

public String getInfoJson()

Compose info JSON object.

Returns:

JSON object of infos.

getKnnJson

public String getKnnJson()

Get knn results. Row structure: (QID), (TID0ID), ... (TIDnID), (DISSIM0), ... (DISSIMn).

Returns:

JSON object