com.chemaxon.overlap.io

Class AllAbsentMasterMoleculeStorage

java.lang.Object

com.chemaxon.overlap.io.AllAbsentMasterMoleculeStorage

All Implemented Interfaces:

MasterMoleculeStorage, MasterStorage<Molecule>, IndirectSerializable<MasterMoleculeStorage>, Serializable

public final class AllAbsentMasterMoleculeStorage
extends Object
implements MasterMoleculeStorage

All absent MasterMoleculeStorage implementation.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
AllAbsentMasterMoleculeStorage(int size) Create.

Method Summary

Modifier and Type	Method and Description
Optional<Molecule>	get(int index) Get given structure identified with an index.
int	getAbsentCount() Number of absent structures.
Optional<String>	getSource(int index) Return given structure source as stored.
Class<Molecule>	getStoredType() Represented type.
boolean	isPresent(int index) Check if given entity is present.
int	size() Number of structures in the storage.
void	writeIndirected(ObjectOutputStream oos, SubProgressObserver po) Write Deserializer conform representation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.chemaxon.overlap.io.MasterStorage

areAllAbsent

Constructor Detail

AllAbsentMasterMoleculeStorage

public AllAbsentMasterMoleculeStorage(int size)

Create.

Parameters:

size - Virtual size

Method Detail

getStoredType

public Class<Molecule> getStoredType()

Description copied from interface: MasterStorage

Represented type.

Specified by:

getStoredType in interface MasterStorage<Molecule>

Returns:

represented type

getSource

public Optional<String> getSource(int index)
                           throws IndexOutOfBoundsException

Description copied from interface: MasterMoleculeStorage

Return given structure source as stored.

Specified by:

getSource in interface MasterMoleculeStorage

Parameters:

index - Structure index

Returns:

Structur source as stored if available.

Throws:

IndexOutOfBoundsException - in case of error

size

public int size()

Description copied from interface: MasterStorage

Number of structures in the storage.

Specified by:

size in interface MasterStorage<Molecule>

Returns:

Number of structures in the storage

getAbsentCount

public int getAbsentCount()

Description copied from interface: MasterStorage

Number of absent structures.

Specified by:

getAbsentCount in interface MasterStorage<Molecule>

Returns:

Number of absent structures.

isPresent

public boolean isPresent(int index)
                  throws IndexOutOfBoundsException

Description copied from interface: MasterStorage

Check if given entity is present.

Specified by:

isPresent in interface MasterStorage<Molecule>

Parameters:

index - Structure index

Returns:

true when structure is present

Throws:

IndexOutOfBoundsException - when index is less than 0 or greater or equal than MasterStorage.size()

get

public Optional<Molecule> get(int index)
                       throws IndexOutOfBoundsException

Description copied from interface: MasterStorage

Get given structure identified with an index.

Specified by:

get in interface MasterStorage<Molecule>

Parameters:

index - Structure index

Returns:

Structure if present

Throws:

IndexOutOfBoundsException - when index is less than 0 or greater or equal than MasterStorage.size()

writeIndirected

public void writeIndirected(ObjectOutputStream oos,
                            SubProgressObserver po)
                     throws IOException

Description copied from interface: IndirectSerializable

Write Deserializer conform representation. First a Deserializer instance is written to the stream using ObjectOutputStream.writeObject(java.lang.Object). This instance is capable of deserializing the content written next.

Specified by:

writeIndirected in interface IndirectSerializable<MasterMoleculeStorage>

Parameters:

oos - Stream to write to

po - Observer to track progress; will be closed upon finishing

Throws:

IOException - delegated from underlying ObjectOutputStream accesses