com.chemaxon.overlap.cli.util.pipeline

Class GetSdfProperty

java.lang.Object

com.chemaxon.overlap.cli.util.pipeline.GetSdfProperty

All Implemented Interfaces:

PipelineStep

public class GetSdfProperty
extends Object
implements PipelineStep

Retrieve an SDF property String.

Constructor Summary

Constructors

Constructor and Description
GetSdfProperty()

Method Summary

Modifier and Type	Method and Description
static void	addToLinenote(LinenoteBuilder<PipelineStep> linenoteBuilder)
void	addToPipeline(PipelineContext pipeline) Wire step into the pipeline.
String	getProperty(Molecule m)
void	init() Initialize the step.
void	propname(String s)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.chemaxon.overlap.cli.util.pipeline.PipelineStep

close

Constructor Detail

GetSdfProperty

public GetSdfProperty()

Method Detail

propname

public void propname(String s)

getProperty

public String getProperty(Molecule m)

init

public void init()
          throws Exception

Description copied from interface: PipelineStep

Initialize the step. Open required files, connections, etc. Be prepared to start stream data from now. Contracts:

• This method might not be invoked during the life cycle of an implementing instance.
• Method PipelineStep.addToPipeline(com.chemaxon.overlap.cli.util.pipeline.PipelineContext) will be invoked before this method.
• File presence, possibly validity checking should be done here.
• Values for single inputs are all set from upstream nodes before invoking this method..
• Outputs are queried after this method returned.
• Method PipelineStep.close() is expected to be invoked sometimes later, regardless of possible error(s) thrown.

Specified by:

init in interface PipelineStep

Throws:

Exception - In case of initialization failure

addToPipeline

public void addToPipeline(PipelineContext pipeline)

Description copied from interface: PipelineStep

Wire step into the pipeline. Contracts:

• Introduce the step using PipelineContext.addStep(com.chemaxon.overlap.cli.util.pipeline.PipelineStep)
• Introduce inputs and outputs. The actual inputs, outputs and their types might depend on the parameterization.
• Invoked before PipelineStep.init().
• Default parameterization is expected to be valid to invoke this method.
• Validity checks based on the parameterization might happen (consistency of the set parameters). Environment (other nodes, file system, etc) based verifications are expected to be executed in PipelineStep.init().
• Apart from interacting with the passed PipelineContext reference this method is side effect free
• Parameterization is expected to be not changed after invoking this method.

Specified by:

addToPipeline in interface PipelineStep

Parameters:

pipeline - Target pipeline.

toString

public String toString()

Overrides:

toString in class Object

addToLinenote

public static void addToLinenote(LinenoteBuilder<PipelineStep> linenoteBuilder)