com.chemaxon.overlap.cli.util.importing

Class ParseStructureRecordToUnguardedWithMol<D extends Descriptor,T extends Serializable>

java.lang.Object

com.chemaxon.overlap.cli.util.importing.ParseStructureRecordToUnguardedWithMol<D,T>

Type Parameters:

D - Type of represented descriptor

T - Type of unguarded form

All Implemented Interfaces:

Function<StructureRecord,ParsedUnguardedWithMolResult<T>>

public class ParseStructureRecordToUnguardedWithMol<D extends Descriptor,T extends Serializable>
extends Object
implements Function<StructureRecord,ParsedUnguardedWithMolResult<T>>

Parse Descriptors from Molecule sources represented as StructureRecords optionally with IDs / additional properties.

Constructor Summary

Constructors

Constructor and Description
ParseStructureRecordToUnguardedWithMol(Function<StructureRecord,String> retrieveIdOrNull, Function<Molecule,String> retrieveSourceForMms, StandardizerWrapper mmsStandardizer, StandardizerWrapper standardizer, DescriptorGenerator<D> generator, UnguardedExtractor<D,T> unguardedExtractor, Function<StructureRecord,List> extractPropertiesOrNull) Construct new instance.

Method Summary

Modifier and Type	Method and Description
ParsedUnguardedWithMolResult<T>	apply(StructureRecord input)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.google.common.base.Function

equals

Methods inherited from interface java.util.function.Function

andThen, compose, identity

Constructor Detail

ParseStructureRecordToUnguardedWithMol

public ParseStructureRecordToUnguardedWithMol(Function<StructureRecord,String> retrieveIdOrNull,
                                              Function<Molecule,String> retrieveSourceForMms,
                                              StandardizerWrapper mmsStandardizer,
                                              StandardizerWrapper standardizer,
                                              DescriptorGenerator<D> generator,
                                              UnguardedExtractor<D,T> unguardedExtractor,
                                              Function<StructureRecord,List> extractPropertiesOrNull)

Construct new instance.

Parameters:

retrieveIdOrNull - Retriever for IDs or null

retrieveSourceForMms - Retriever for source to be stored in the built MMS

mmsStandardizer - Standardizer before MMS export AND descriptor generation

standardizer - Standardizer before descriptor generation

generator - DescriptorGenerator to parse the descriptors String representation

unguardedExtractor - UnguardedExtractor to extract unguarded form from parsed descriptors

extractPropertiesOrNull - Extract additional properties

Method Detail

apply

public ParsedUnguardedWithMolResult<T> apply(StructureRecord input)

Specified by:

apply in interface Function<StructureRecord,ParsedUnguardedWithMolResult<T extends Serializable>>