com.chemaxon.overlap.cli.util

Class DescriptorsWithIdsImpl<T extends Serializable>

java.lang.Object

com.chemaxon.overlap.cli.util.DescriptorsWithIdsImpl<T>

Type Parameters:

T - Unguarded type

All Implemented Interfaces:

DescriptorsWithIds<T>, Serializable

public class DescriptorsWithIdsImpl<T extends Serializable>
extends Object
implements DescriptorsWithIds<T>

Simple container implementation.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
DescriptorsWithIdsImpl(DescriptorContainer desc) Construct without separate IDs.
DescriptorsWithIdsImpl(MasterStringStorage idstorageOrNull, DescriptorContainer<T> descriptorContainer) Construct.
DescriptorsWithIdsImpl(OverlapAnalysisContext<?,T> context, ParsedUnguardedResultHandler<T> parsedResults) Construct.

Method Summary

Modifier and Type	Method and Description
OverlapAnalysisContext<?,T>	getContext() Get represented OverlapAnalysisContext.
UnguardedPagedOverlap<T>	getDescriptors() Represented descriptors.
MasterStringStorage	getIds() Represented IDs.
IndexProjector	getIndexProjector() Get represented index projector.
DescriptorsWithIds<T>	withMetric(String metricOrNull) Use specified metric.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.chemaxon.overlap.cli.util.DescriptorsWithIds

getUnguardedsAsFlatList, iterateUnguardedsInPages, size, toMultilineString

Constructor Detail

DescriptorsWithIdsImpl

public DescriptorsWithIdsImpl(DescriptorContainer desc)

Construct without separate IDs.

Parameters:

desc - Descriptors to expose

DescriptorsWithIdsImpl

public DescriptorsWithIdsImpl(MasterStringStorage idstorageOrNull,
                              DescriptorContainer<T> descriptorContainer)

Construct.

Parameters:

idstorageOrNull - IDs to expose or null for generated IDs

descriptorContainer - Descriptors to expose

DescriptorsWithIdsImpl

public DescriptorsWithIdsImpl(OverlapAnalysisContext<?,T> context,
                              ParsedUnguardedResultHandler<T> parsedResults)

Construct.

Parameters:

context - Context to use

parsedResults - Results from descriptor parsing

Method Detail

getIds

public MasterStringStorage getIds()

Description copied from interface: DescriptorsWithIds

Represented IDs. Storage is always returned, however some of the stored IDs might be missing.

Specified by:

getIds in interface DescriptorsWithIds<T extends Serializable>

Returns:

represented IDs.

getDescriptors

public UnguardedPagedOverlap<T> getDescriptors()

Description copied from interface: DescriptorsWithIds

Represented descriptors.

Specified by:

getDescriptors in interface DescriptorsWithIds<T extends Serializable>

Returns:

represented descriptors

getIndexProjector

public IndexProjector getIndexProjector()

Description copied from interface: DescriptorsWithIds

Get represented index projector.

Specified by:

getIndexProjector in interface DescriptorsWithIds<T extends Serializable>

Returns:

Index projector

getContext

public OverlapAnalysisContext<?,T> getContext()

Description copied from interface: DescriptorsWithIds

Get represented OverlapAnalysisContext.

Specified by:

getContext in interface DescriptorsWithIds<T extends Serializable>

Returns:

represented context

withMetric

public DescriptorsWithIds<T> withMetric(String metricOrNull)

Description copied from interface: DescriptorsWithIds

Use specified metric.

Specified by:

withMetric in interface DescriptorsWithIds<T extends Serializable>

Parameters:

metricOrNull - Metric to use or null to use default

Returns:

An instance exposing the specified metric