Package com.chemaxon.overlap.cli

Class Summary

Class	Description
BuildStorage	Build serialized descriptors storage from molecules.
BuildStorageStat	Statistics for BuildStorage execution.
CalculateOverlap	Calculate overlap between two sets.
CalculateOverlap.OverlapResult<D extends Descriptor,T extends Serializable>	Data object for compared sets.
CalculateOverlapParameters	Command line arguments.
CalculateOverlapParameters.NoSplitter	Helper class to avoid splitting multi arity cli arguments on commas.
CalculateOverlapStat	Statistics for CalculateOverlap execution.
CalculateSelfOverlap	Calculate self overlap.
CalculateSelfOverlap.SelfOverlap<D extends Descriptor,T extends Serializable>	Data object for self overlap.
CreateAllAbsentMms	Create master molecules storage containing only absents.
CreateAllAbsentMmsParameters	Command line arguments for CreateMms.
CreateMms	Create master molecules storage from a structure file.
CreateMmsParameters	Command line arguments for CreateMms.
CreateMmsStat	Statistics for CreateMms execution.
DumpStorage	Read various serialized storages and dump their contents to the console.
DumpStorageParameters	Command line arguments for ImportStorage.
ImportStorage	Build serialized descriptors storage from custom Strings representation.
ImportStorageParameters	Command line arguments for ImportStorage.
JsEval	Read various serialized storages and dump their contents to the console.
JsEvalParameters	Command line arguments for ImportStorage.
MadfastImport	Unified structure import/preprocess tool.
MadfastImportParameters	CLI parameters for MadfastImport.
MadfastImportParameters.NoSplitter
MadfastImportStat	Statistics for MadfastImport execution.
PagedDescriptorImport	Example code to excercise paged descriptor storage.
PagedDescriptorImportParameters	Command line parameters for PagedDescriptorImport.
PipelineRunner	Responsible for composing the pipeline.
PipelineRunner.Connection<T>
PipelineRunner.IO<T>
PrepareMolecules	Common utilities to prepare molecule sets.
PrepareMoleculesParameters	Command line parameters for PrepareMolecules.
SearchStorage	Search serialized descriptors storage.
SearchStorageParameters	Command line arguments for SearchStorage.
SearchStorageStat	Statistics for SearchStorage execution.

Enum Summary

Enum	Description
DumpStorage.DescOutFormat	Descriptor output format.
PipelineRunner.IOType
SearchStorage.SearchMode	Search mode.