jklustor-overlap-0.0.2-20140619012940 (ChemAxon)


Uses of Interface
com.chemaxon.overlap.unguarded.UnguardedDissimilarityCalculator

Packages that use UnguardedDissimilarityCalculator
com.chemaxon.overlap Overlap analysis related codes. 
com.chemaxon.overlap.bruteforce Brute force similarity search. 
com.chemaxon.overlap.storage   
com.chemaxon.overlap.unguarded Unguarded descriptor handling. 
 

Uses of UnguardedDissimilarityCalculator in com.chemaxon.overlap
 

Methods in com.chemaxon.overlap that return UnguardedDissimilarityCalculator
 UnguardedDissimilarityCalculator<T> OverlapAnalysisContext.getUnguardedDissimilarityCalculator()
          Gets represented unguarded dissimilarty calculator.
 

Methods in com.chemaxon.overlap with parameters of type UnguardedDissimilarityCalculator
<N extends Serializable>
OverlapAnalysisContext<D,N>
OverlapAnalysisContext.unguarded(Function<D,N> extractor, UnguardedDissimilarityCalculator<N> unguardedCalc)
          Update represented unguarded layer.
 

Uses of UnguardedDissimilarityCalculator in com.chemaxon.overlap.bruteforce
 

Fields in com.chemaxon.overlap.bruteforce declared as UnguardedDissimilarityCalculator
(package private)  UnguardedDissimilarityCalculator<T> UnguardedPagedOverlap.SearchMostSimilars.comparator
          Underlying comparator.
(package private)  UnguardedDissimilarityCalculator<T> UnguardedPagedOverlap.SearchPage.comparator
          Underlying comparator.
 

Methods in com.chemaxon.overlap.bruteforce with parameters of type UnguardedDissimilarityCalculator
 UnguardedPagedOverlap<T> UnguardedPagedOverlap.withComparator(UnguardedDissimilarityCalculator<T> comparator)
          Construct another BruteForcePagedSimilarity instance representing a different comparator.
 

Constructors in com.chemaxon.overlap.bruteforce with parameters of type UnguardedDissimilarityCalculator
FullMatrix.Calc(List<T> queries, UnguardedDissimilarityCalculator<T> calc)
          Construct.
SelfKnn.Calc(int k, List<T> queries, UnguardedDissimilarityCalculator<T> calc)
          Construct.
UnguardedPagedOverlap.SearchMostSimilars(UnguardedDissimilarityCalculator<T> comparator, T query, List<ImmutableList<T>> pages, int firstId, int size)
          Construct task
UnguardedPagedOverlap.SearchPage(UnguardedDissimilarityCalculator<T> comparator, List<T> queries, List<T> page, int firstId)
          Construct.
UnguardedPagedOverlap(Function<D,T> extractor, UnguardedDissimilarityCalculator<T> comparator, List<ImmutableList<D>> pages, List<D> page)
          Construct new immutable reference from pages of Descriptor instances.
UnguardedPagedOverlap(UnguardedDissimilarityCalculator<T> comparator, ImmutableList<ImmutableList<T>> pages, int size)
          Construct new immutable reference from prepared storage.
 

Uses of UnguardedDissimilarityCalculator in com.chemaxon.overlap.storage
 

Methods in com.chemaxon.overlap.storage with parameters of type UnguardedDissimilarityCalculator
<T extends Serializable>
UnguardedPagedOverlap<T>
PagedDescriptorStorage.createBruteForceOverlap(Function<D,T> extractor, UnguardedDissimilarityCalculator<T> comparator)
          Create a brute force overlap calculator from the current state of the storage.
static
<D extends com.chemaxon.descriptors.common.Descriptor,T extends Serializable>
UnguardedPagedOverlap<T>
PagedDescriptorStorage.deserializeUnguarded(int pagesize, com.chemaxon.descriptors.common.DescriptorGenerator<D> generator, Function<D,T> extractor, UnguardedDissimilarityCalculator<T> comparator, ObjectInputStream ois, com.chemaxon.calculations.common.SubProgressObserver po)
          Deserialize an UnguardedPagedSimilarity from a binary serialized form.
 

Uses of UnguardedDissimilarityCalculator in com.chemaxon.overlap.unguarded
 

Classes in com.chemaxon.overlap.unguarded that implement UnguardedDissimilarityCalculator
 class UnguardedBinaryIntManhattan
          Unguarded Manhattan comparator for binary fingerprints represented as int [].
 class UnguardedBinaryIntTanimoto
          Unguarded Tanimoto comparator for binary fingerprints represented as int [].
 class UnguardedBinaryLongManhattan
          Unguarded Manhattan comparator for binary fingerprints represented as long [].
 class UnguardedBinaryLongTanimoto
          Unguarded Tanimoto comparator for binary fingerprints represented as long [].
 class UnguardedBinaryLongTversky
          Parametrized Tversky comparator for binary fingerprints represented as long [].
 class UnguardedFloatVectorEuclidSqr
          Unguarded square of euclidean comparator for float[] vectors.
 class UnguardedFloatVectorManhattan
          Unguarded manhattan dissimilarity for float[] vectors.
 class UnguardedFloatVectorMaxDiff
          Unguarded maximum diff dissimilarity for float[] vectors.
 class UnguardedFloatVectorTanimoto
          Unguarded tanimoto-like comparator for non-negative float[] vectors.
 

Methods in com.chemaxon.overlap.unguarded that return UnguardedDissimilarityCalculator
static UnguardedDissimilarityCalculator<byte[]> Unguardeds.wrapComparator(com.chemaxon.descriptors.common.DescriptorComparator<?> comparator)
          Wrap a DescriptorComparator.
 


jklustor-overlap-0.0.2-20140619012940 (ChemAxon)