jklustor-all-api-0.0.7-20140619012755 (ChemAxon)


Serialized Form


Package com.chemaxon.descriptors.alignment

Class com.chemaxon.descriptors.alignment.AbstractShapeComparator extends Object implements Serializable

Serialized Fields

generator

DescriptorGenerator<B extends Descriptor> generator

Class com.chemaxon.descriptors.alignment.AbstractShapeGenerator extends Object implements Serializable

Serialized Fields

parameters

AbstractShapeGeneratorParameter parameters

Class com.chemaxon.descriptors.alignment.AbstractShapeGeneratorParameter extends Object implements Serializable

Serialized Fields

atomTyping

AtomTyping atomTyping
The setting for available shape coloring methods.

Class com.chemaxon.descriptors.alignment.ShapeComparatorException extends RuntimeException implements Serializable

serialVersionUID: 1L

Class com.chemaxon.descriptors.alignment.ShapeGeneratorException extends RuntimeException implements Serializable

serialVersionUID: 1L


Package com.chemaxon.descriptors.common

Package com.chemaxon.descriptors.fingerprints.cfp

Class com.chemaxon.descriptors.fingerprints.cfp.CfpParameters extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

bitsPerPattern

int bitsPerPattern
Bits set for each pattern.


length

int length
Fingerprint length (bit count).


bondCount

int bondCount
Max pattern length considered (bond count).


Package com.chemaxon.descriptors.fingerprints.ecfp

Class com.chemaxon.descriptors.fingerprints.ecfp.EcfpParameters extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

diameter

int diameter
Diameter parameter.


length

int length
Fingerprint length (bit count).


atomTypizer

EcfpAtomTypizers atomTypizer
Atom typizer to use.


Package com.chemaxon.descriptors.fingerprints.pf2d

Class com.chemaxon.descriptors.fingerprints.pf2d.PfParameters extends Object implements Serializable

Serialized Fields

xmlConfig

Optional<T> xmlConfig
XML configuration string.


Package com.chemaxon.descriptors.metrics

Class com.chemaxon.descriptors.metrics.TverskyParameters extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

coeffTarget

double coeffTarget
Coefficient for target only part.


coeffQuery

double coeffQuery
Coefficient for query only part.


Package com.chemaxon.descriptors.vectors.binary

Class com.chemaxon.descriptors.vectors.binary.BvGeneratorImpl extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

parameters

BvParameters parameters

Class com.chemaxon.descriptors.vectors.binary.BvParameters extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

length

int length
Fingerprint length (bit count).


stringFormat

BvParameters.StringFormat stringFormat
String format to use.


endianness

BinaryVectors.Endianness endianness
Endianness of long-int-byte-binary packing operations.


Package com.chemaxon.descriptors.vectors.floats

Class com.chemaxon.descriptors.vectors.floats.FvGeneratorImpl extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

parameters

FvParameters parameters

Class com.chemaxon.descriptors.vectors.floats.FvParameters extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

length

int length
Fingerprint length (bit count).


numericRepresentation

FvParameters.NumericRepresentation numericRepresentation
Numeric representation.


scaledMin

double scaledMin
Minimum value for scaling.


scaledMax

double scaledMax
Maximum value for scaling.


sparseCompression

FvParameters.SparseCompression sparseCompression
Optimization for sparse vectors.

Class com.chemaxon.descriptors.vectors.floats.ScaledFvGeneratorImpl extends Object implements Serializable

serialVersionUID: 0L

Serialized Fields

parameters

FvParameters parameters

scaler

com.chemaxon.descriptors.common.realvector.Scaler scaler

factory

com.chemaxon.descriptors.common.realvector.ScaledFvDescriptorFactory factory


jklustor-all-api-0.0.7-20140619012755 (ChemAxon)